Match details
Record ID: |
MW752206.1 |
Database: |
nt |
Go to original record |
Description: |
Salvia roborowskii voucher Liu et al. 3223 chloroplast, complete genome. |
Taxon: |
Salvia roborowskii |
Original size: |
151678 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
46832 |
47361 |
+ |
530 bp |
|
1 cgaaatcggt agacgctacg gacttaatta gattgagcct tggtatggaa
51 acttactaag tgataacttt caaattcaga gaaaccccgg aattaataaa
101 aatgggcaat cctgagccaa atcctgtttt ctcaaaaaaa aaggataggt
151 gcagagactc aatggaagtt gttctaacaa atggagttga ctgcgccggt
201 agaggaatct ttccacggaa actttagaaa ggatgaagga taaacccatc
251 tattgaatac tatatcaaat gattaatgtt ggcccgaatc tgttttttta
301 atatgaaaat ggaaaaatcg atgtgaattt atttcacgtt gaagaataaa
351 tcgaatattc atcaactcat tcactccata gttcgataga tcttttaaag
401 aacttattaa tcggacgaga ataaagatag agtcccattc tacatgtcaa
451 taccggcaac aatgaaattt atagtaagag gaaaatccgt cgactttaaa
501 aatcgtgagg gttcaagtcc ctctatcccc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.38e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
530 |
511 |
2.38e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.