Match details
Record ID: |
MW762594.1 |
Database: |
nt |
Go to original record |
Description: |
Pseudognaphalium affine chloroplast, complete genome. |
Taxon: |
Pseudognaphalium affine |
Original size: |
151573 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
46825 |
47350 |
+ |
526 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acttactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101 aatgggcaat cctgagccaa atcacgtttt ccgaaaacaa acaaaggttc
151 agaaagcgaa aataaaaagg ataggtgcag agactcgatg gaagctgttc
201 taacaaatgg agttgattgt cttacattgg tagagaaatc cttctatcga
251 aacttcagaa aagatgaagg ataaacctgt ctacataata gagatacaga
301 agaattgata tgaatcgatt ccatattgaa ttgaagaaag aatcgaatat
351 tcattgatca aaccattcac tccataatct gatagatctt ttgaagaact
401 gattaatcgg acgagaataa agatagagtc ccgttctaca tgtcaatacc
451 ggcaacaatg aaatttatag taagaggaaa atccgtcgat ttcaaaaatc
501 atgagggttc aagtccctct atcccc
View other 2 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.37e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
526 |
507 |
2.37e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.