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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MW357051.1 nt Poa pauciflora voucher US:Peterson ... 1796 bp Poa pauciflora QL-PLN-00-007 618 bp View
MW357053.1 nt Poa petrosa voucher CAN:Rodrigez & ... 1778 bp Poa petrosa QL-PLN-00-007 591 bp View
MW362306.1 nt Benincasa hispida chloroplast, comp... 156758 bp Benincasa hispida QL-PLN-00-007 593 bp View
MW376483.1 nt Isodon rubescens chloroplast, compl... 152727 bp Isodon rubescens QL-PLN-00-007 554 bp View
MW387500.1 nt Nepeta hemsleyana chloroplast, comp... 152183 bp Nepeta hemsleyana QL-PLN-00-007 538 bp View
MW387501.1 nt Salvia castanea f. tomentosa chloro... 151590 bp Salvia castanea f. tomentosa QL-PLN-00-007 529 bp View
MW392089.1 nt Plumeria alba chloroplast, partial ... 150270 bp Plumeria alba QL-PLN-00-007 564 bp View
MW392090.1 nt Plumeria jamaicensis chloroplast, p... 141465 bp Plumeria jamaicensis QL-PLN-00-007 566 bp View
MW392092.1 nt Plumeria filifolia chloroplast, par... 150393 bp Plumeria filifolia QL-PLN-00-007 564 bp View
MW392094.1 nt Plumeria lanata chloroplast, partia... 150376 bp Plumeria lanata QL-PLN-00-007 564 bp View
MW392095.1 nt Plumeria magna chloroplast, partial... 133694 bp Plumeria magna QL-PLN-00-007 564 bp View
MW392096.1 nt Plumeria montana chloroplast, parti... 122573 bp Plumeria montana QL-PLN-00-007 564 bp View
MW392098.1 nt Plumeria subsessilis chloroplast, p... 150053 bp Plumeria subsessilis QL-PLN-00-007 564 bp View
MW392099.1 nt Plumeria tuberculata chloroplast, p... 150145 bp Plumeria tuberculata QL-PLN-00-007 564 bp View
MW392100.1 nt Plumeria pudica chloroplast, partia... 123089 bp Plumeria pudica QL-PLN-00-007 564 bp View
MW430049.1 nt Campsis grandiflora chloroplast, co... 154303 bp Campsis grandiflora QL-PLN-00-007 562 bp View
MW432176.1 nt Dolichandrone cauda-felina chloropl... 159538 bp Markhamia cauda-felina QL-PLN-00-007 565 bp View
MW432177.1 nt Dolichandrone spathacea chloroplast... 159139 bp Dolichandrone spathacea QL-PLN-00-007 564 bp View
MW435406.1 nt Salvia honania voucher 0168 chlorop... 151522 bp Salvia honania QL-PLN-00-007 529 bp View
MW435407.1 nt Salvia nanchuanensis voucher YJX-01... 151426 bp Salvia nanchuanensis QL-PLN-00-007 529 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.