Match details
Record ID: |
MW387500.1 |
Database: |
nt |
Go to original record |
Description: |
Nepeta hemsleyana chloroplast, complete genome. |
Taxon: |
Nepeta hemsleyana |
Original size: |
152183 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
46885 |
47422 |
+ |
538 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acttactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101 aatgggcaat cctgagccaa atcctgtttt ctcaaaacaa aggataggtg
151 cagagactca atggaagctg ttctaacaaa tggagttgac tgcgccggta
201 gaggaatctt tccatggaaa ctttagaaag gataaacgca tctattgaat
251 actatatcaa atgattaatg ttggcccgaa tccgtttttt ttaatatgaa
301 aatgaaaaaa tggaaaaatc ggtgtgaatt tatttcacgt tgaagaaaaa
351 atcgaatatt catcaactca ttcactccat agtccgatag atcttttaaa
401 taactgatta atcggacgag aataaagata gagtcccatt ctacatgcta
451 catgtgaata ccggcaacaa tgaaatttat agtaatagga aaatccgtcg
501 actttaaaaa tcgtgagggt tcaagtccct ctatcccc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.42e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
538 |
519 |
2.42e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.