Match details
Record ID: |
MW392098.1 |
Database: |
nt |
Go to original record |
Description: |
Plumeria subsessilis chloroplast, partial genome. |
Taxon: |
Plumeria subsessilis |
Original size: |
150053 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
47877 |
48440 |
+ |
564 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccccgg aattaataaa
101 aagggcaatc ctgagccaaa tcctgttttt cacaaacaaa ggttcagaaa
151 acgaaaacaa ggataggtgc agagactcaa cggaagctat tctaacaaat
201 ggagttggcc gcgttggtag agaaatcttt ccgtcgaaaa ttcagaaagg
251 atgaagtata aacgtatata catacgtatt gaatactata tcaaatgatt
301 aatgccaacc cgaatgaatc tgtatttttt ctataaaaac tggaagaatt
351 ggtgtgattc gattctttct tcaatgtgga atccaatatt cattgatcaa
401 atgattcact ccacagtctg tagatctttt caagaactga ttaatcggac
451 gagaataaag atagagtccc gttctacatg tcaatgctgg caacaatgaa
501 atttatagta agaggaaaat ccgtcgactt aaaaaatcgt gagggttcaa
551 gtccctctat cccc
View other 7 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.54e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
564 |
545 |
2.54e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.