Match details
Record ID: |
MW430049.1 |
Database: |
nt |
Go to original record |
Description: |
Campsis grandiflora chloroplast, complete genome. |
Taxon: |
Campsis grandiflora |
Original size: |
154303 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
47518 |
48079 |
+ |
562 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccccgg aattaataaa
101 aatgggcaat cctgagccaa atcctttttt ctcaaaacaa aggttcagaa
151 aacgaaaaaa aaaaaggata ggtgcagaga ctcaatggaa gctgttctaa
201 caaatggagt tgactgcgtt ggtagaggaa tctttccatc gaaacttcag
251 aaaggatgaa ggataaacgt atctattgaa tactatatca aatatcaaat
301 gattaatgat ggcccgaatc tgtatctgta tttttaatgg aaaaattggt
351 gtgaattgat tccacattga agaaagaatc gaatattcat tcatcaaatc
401 attcactcca tagtccgata gttcttttaa agaactgatt aatcggacaa
451 gaataaagat agagtcccat tctacatgtc aataccggca acaatgaaat
501 ttatagtaag aggaaaatcc gtcgactttc aaaatcgtga gggttcaagt
551 ccctctatcc cc
View other 2 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.53e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
562 |
543 |
2.53e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.