Amplicon details

Amplicon:

562 bp
1     cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51    acctactaag tgataacttt caaattcaga gaaaccccgg aattaataaa
101   aatgggcaat cctgagccaa atcctttttt ctcaaaacaa aggttcagaa
151   aacgaaaaaa aaaaaggata ggtgcagaga ctcaatggaa gctgttctaa
201   caaatggagt tgactgcgtt ggtagaggaa tctttccatc gaaacttcag
251   aaaggatgaa ggataaacgt atctattgaa tactatatca aatatcaaat
301   gattaatgat ggcccgaatc tgtatctgta tttttaatgg aaaaattggt
351   gtgaattgat tccacattga agaaagaatc gaatattcat tcatcaaatc
401   attcactcca tagtccgata gttcttttaa agaactgatt aatcggacaa
451   gaataaagat agagtcccat tctacatgtc aataccggca acaatgaaat
501   ttatagtaag aggaaaatcc gtcgactttc aaaatcgtga gggttcaagt
551   ccctctatcc cc 

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
MW430049.1 nt Campsis grandiflora chloroplast, co... 154303 bp Campsis grandiflora QL-PLN-00-007 562 bp View
ON453817.1 nt Campsis grandiflora chloroplast, co... 154282 bp Campsis grandiflora QL-PLN-00-007 562 bp View
OM066074.1 nt Campsis grandiflora voucher D.T.W L... 154357 bp Campsis grandiflora QL-PLN-00-007 562 bp View


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.