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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MW279197.1 nt Amana wanzhensis clone AW31O chloro... 151447 bp Amana wanzhensis QL-PLN-00-007 565 bp View
MW288075.1 nt Amana baohuaensis clone BHS_X_01 ch... 151287 bp Amana baohuaensis QL-PLN-00-007 568 bp View
MW288076.1 nt Amana baohuaensis clone BHS_X_02 ch... 151287 bp Amana baohuaensis QL-PLN-00-007 568 bp View
MW288077.1 nt Amana baohuaensis clone BHS_X_03 ch... 151350 bp Amana baohuaensis QL-PLN-00-007 568 bp View
MW288078.1 nt Amana baohuaensis clone BHS_X_04 ch... 151287 bp Amana baohuaensis QL-PLN-00-007 568 bp View
MW288079.1 nt Amana baohuaensis clone BHS_X_05 ch... 151365 bp Amana baohuaensis QL-PLN-00-007 568 bp View
MW288085.1 nt Amana kuocangshanica clone LYB_T_02... 151446 bp Amana kuocangshanica QL-PLN-00-007 568 bp View
MW288928.1 nt Cucumis melo subsp. agrestis chloro... 156017 bp Cucumis melo subsp. agrestis QL-PLN-00-007 599 bp View
MW297177.1 nt Kalanchoe sp. DIR059 tRNA-Leu (trnL... 909 bp Kalanchoe sp. DIR059 QL-PLN-00-007 577 bp View
MW307827.1 nt Clerodendrum japonicum chloroplast,... 152215 bp Clerodendrum japonicum QL-PLN-00-007 559 bp View
MW309811.1 nt Torenia fordii chloroplast, complet... 154007 bp Torenia fordii QL-PLN-00-007 569 bp View
MW309817.1 nt Alopecurus pratensis clone DKMN chl... 136157 bp Alopecurus pratensis QL-PLN-00-007 620 bp View
MW309819.1 nt Plantago asiatica clone CQC chlorop... 164939 bp Plantago asiatica QL-PLN-00-007 585 bp View
MW324578.1 nt Przewalskia tangutica chloroplast, ... 156597 bp Przewalskia tangutica QL-PLN-00-007 571 bp View
MW331536.1 nt Sinopodophyllum hexandrum chloropla... 157255 bp Sinopodophyllum hexandrum QL-PLN-00-007 539 bp View
MW338732.1 nt Phlomoides rotata chloroplast, comp... 151829 bp Phlomoides rotata QL-PLN-00-007 560 bp View
MW338733.1 nt Catalpa fargesii chloroplast, compl... 157765 bp Catalpa fargesii QL-PLN-00-007 563 bp View
MW346665.1 nt Torenia fournieri chloroplast, comp... 153938 bp Torenia fournieri QL-PLN-00-007 569 bp View
MW348925.1 nt Myoporum bontioides chloroplast, co... 151719 bp Myoporum bontioides QL-PLN-00-007 563 bp View
MW348926.1 nt Verbena officinalis chloroplast, co... 153286 bp Verbena officinalis QL-PLN-00-007 553 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.