Match details
Record ID: |
MW279197.1 |
Database: |
nt |
Go to original record |
Description: |
Amana wanzhensis clone AW31O chloroplast, complete genome. |
Taxon: |
Amana wanzhensis |
Original size: |
151447 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
45126 |
45690 |
+ |
565 bp |
|
1 cgaaatcggt agacgctacg gacttgatta aattgagcct tggtatggaa
51 acctgctaag tgataacttc caaattcaga gaaaccccgg aattaaaaat
101 gggcaatcct gagccaaatc tttttttttc aaaaaaaaag gataggtgca
151 gagactcaat ggaagctgtt ctaacaaatg gagttgatta cgttacatgc
201 gctagtagcc ggaatccttc tatcaaaatt attgaaaaga tacccgccct
251 atatatgtag atatacatac tcacatagta aacgattgat taatcgcagc
301 ccaaatccat tatatatgaa aaatttaaga atcattgtga atctattcca
351 ttcgatattc caatcgaagt tggaggaaga atcgaatatt aaatgatcaa
401 attattcatt ccaaagtctg atagatcttt tgaaaaaccg attattcgaa
451 cgagaataaa gagagagtcc cattctacgt gtcaataccg acaacaatga
501 aatttatagt aaaaggaaaa tccgtcgact ttaaaagtcg tgagggttca
551 agtccctcta tcccc
View other 3 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.54e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
565 |
546 |
2.54e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.