Match details
Record ID: |
MW288085.1 |
Database: |
nt |
Go to original record |
Description: |
Amana kuocangshanica clone LYB_T_02 chloroplast, complete genome. |
Taxon: |
Amana kuocangshanica |
Original size: |
151446 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
45123 |
45690 |
+ |
568 bp |
|
1 cgaaatcggt agacgctacg gacttgatta aattgagcct tggtatggaa
51 acctgctaag tgataacttc caaattcaga gaaaccccgg aattaaaaat
101 gggcaatcct gagccaaatc tttttttttt tttcaaaaaa aaggataggt
151 gcagagactc aatggaagct gttctaacaa atggagttga ttacgttaca
201 tgcgctagta gccggaatcc ttctatcaaa attattgaaa agatacccgc
251 cctatatatg tagatataca tactcacata gtaaacgatt gattaatcgc
301 agcccaaatc cattatatat gaaaaattta agaatcattg tgaatctatt
351 ccattcgata ttccaatcga agttggagga agaatcgaat attaaatgat
401 caaattattc attccaaagt ctgatagatc ttttgaaaaa ccgattattc
451 gaacgagaat aaagagagag tcccattcta cgtgtcaata ccgacaacaa
501 tgaaatttat agtaaaagga aaatccgtcg actttaaaag tcgtgagggt
551 tcaagtccct ctatcccc
View other 7 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.56e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
568 |
549 |
2.56e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.