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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MT156373.1 nt Salvia madrensis chloroplast, compl... 151091 bp Salvia madrensis QL-PLN-00-007 564 bp View
MT156374.1 nt Salvia oxyphora chloroplast, comple... 151014 bp Salvia oxyphora QL-PLN-00-007 564 bp View
MT156375.1 nt Salvia umbratica chloroplast, compl... 151640 bp Salvia umbratica QL-PLN-00-007 529 bp View
MT156376.1 nt Salvia digitaloides chloroplast, co... 151592 bp Salvia digitaloides QL-PLN-00-007 529 bp View
MT156377.1 nt Salvia nipponica chloroplast, compl... 151484 bp Salvia nipponica QL-PLN-00-007 529 bp View
MT156379.1 nt Salvia grandifolia chloroplast, com... 151118 bp Salvia grandifolia QL-PLN-00-007 563 bp View
MT165918.1 nt Trema orientale voucher YXing886 ch... 157174 bp Trema orientale QL-PLN-00-007 589 bp View
MT174154.1 nt Dipteryx ferrea isolate DIMIPER2000... 622 bp Dipteryx ferrea QL-PLN-00-007 611 bp View
MT211646.1 nt Trichosanthes kirilowii voucher MBC... 156798 bp Trichosanthes kirilowii QL-PLN-00-007 585 bp View
MT211647.1 nt Trichosanthes kirilowii voucher YSG... 156791 bp Trichosanthes kirilowii QL-PLN-00-007 585 bp View
MT211648.1 nt Trichosanthes kirilowii var. japoni... 157155 bp Trichosanthes kirilowii var. japonica QL-PLN-00-007 587 bp View
MT211649.1 nt Trichosanthes kirilowii var. japoni... 157066 bp Trichosanthes kirilowii var. japonica QL-PLN-00-007 586 bp View
MT211650.1 nt Trichosanthes rosthornii voucher KI... 157097 bp Trichosanthes rosthornii QL-PLN-00-007 590 bp View
MT240944.1 nt Acanthus ebracteatus chloroplast, c... 150823 bp Acanthus ebracteatus QL-PLN-00-007 535 bp View
MT241264.1 nt Stachys affinis chloroplast, comple... 149523 bp Stachys affinis QL-PLN-00-007 571 bp View
MT261150.1 nt Calochortus venustus chloroplast, c... 155688 bp Calochortus venustus QL-PLN-00-007 581 bp View
MT261152.1 nt Cardiocrinum cordatum plastid, comp... 152391 bp Cardiocrinum cordatum QL-PLN-00-007 611 bp View
MT261153.1 nt Clintonia udensis chloroplast, comp... 156214 bp Clintonia udensis QL-PLN-00-007 602 bp View
MT261156.1 nt Fritillaria usuriensis plastid, com... 152156 bp Fritillaria usuriensis QL-PLN-00-007 607 bp View
MT261159.1 nt Lilium amabile plastid, complete ge... 152614 bp Lilium amabile QL-PLN-00-007 616 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.