Match details
Record ID: |
MT241264.1 |
Database: |
nt |
Go to original record |
Description: |
Stachys affinis chloroplast, complete genome. |
Taxon: |
Stachys affinis |
Original size: |
149523 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
45461 |
46031 |
+ |
571 bp |
|
1 cgaaatcggt agacgctacg gacttaatta taattaaatt gagccttagt
51 gtgggaaacc tactaagtga taactttcaa attcagagaa accccggaat
101 taatcaaaat gggcgatcct gatccaaatc ctgttttttc aaaacaaagg
151 ttcaaaaaac caaataaagg ataggtgcag agactcaacg gaagctgttc
201 taacaaatgg agttgactgc gttggtagag gaatcctttc tacggaaact
251 tcagaaagga tgaaggataa acgtatctat cgaatactat atcaaatgat
301 taatgatggc ccgaatccgt atttttgaat atgaaaaata gaagaataga
351 agaattggtg tgaattgatt ctatattgaa gaaaaaatcg aatattcatt
401 cctcaaatca ttcactccat agtccgatag atcttttaaa gacctgatta
451 atcggacgag aataaagata gagtcccatt ctacatgtca ataccggcaa
501 caatgaaatt tatagtaaga ggaaaatccg tcgactttaa aaatcgtgag
551 ggttcaagtc cctctatccc c
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.57e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
571 |
552 |
2.57e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.