European Commission logo
Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MK876644.1 nt Trigonostemon diffusus tRNA-Leu (tr... 836 bp Trigonostemon diffusus QL-PLN-00-007 534 bp View
MK876647.1 nt Trigonostemon hartleyi tRNA-Leu (tr... 979 bp Trigonostemon hartleyi QL-PLN-00-007 619 bp View
MK876652.1 nt Trigonostemon magnificus tRNA-Leu (... 977 bp Trigonostemon magnificus QL-PLN-00-007 609 bp View
MK944405.1 nt Salvia yunnanensis chloroplast, com... 151396 bp Salvia yunnanensis QL-PLN-00-007 521 bp View
MK944406.1 nt Salvia roborowskii chloroplast, com... 151654 bp Salvia roborowskii QL-PLN-00-007 530 bp View
MK944407.1 nt Salvia prattii chloroplast, complet... 151690 bp Salvia prattii QL-PLN-00-007 529 bp View
MK946456.1 nt Rungia pectinata chloroplast, compl... 149627 bp Rungia pectinata QL-PLN-00-007 552 bp View
MK954109.1 nt Lilium pumilum chloroplast, complet... 152591 bp Lilium pumilum QL-PLN-00-007 614 bp View
MK954110.1 nt Lilium davidii var. unicolor chloro... 152659 bp Lilium davidii var. unicolor QL-PLN-00-007 608 bp View
MK988314.1 nt Rheum nobile voucher cp20190524 chl... 161707 bp Rheum nobile QL-PLN-00-007 603 bp View
MK994503.1 nt Lycium ruthenicum voucher LRUTH2018... 154979 bp Lycium ruthenicum QL-PLN-00-007 571 bp View
MN038143.1 nt Bambusa variostriata plastid, compl... 139458 bp Bambusa variostriata QL-PLN-00-007 613 bp View
MN044639.1 nt Glycocystis beckeri plastid, partia... 151763 bp Glycocystis beckeri QL-PLN-00-007 563 bp View
MN044643.1 nt Calamphoreus inflatus plastid, part... 151631 bp Calamphoreus inflatus QL-PLN-00-007 566 bp View
MN047312.1 nt Scutellaria indica var. coccinea ch... 151956 bp Scutellaria indica var. coccinea QL-PLN-00-007 551 bp View
MN062350.1 nt Salvia trijuga plastid, complete ge... 151345 bp Salvia trijuga QL-PLN-00-007 532 bp View
MN062352.1 nt Salvia plebeia plastid, complete ge... 151081 bp Salvia plebeia QL-PLN-00-007 529 bp View
MN078360.1 nt Cenchrus echinatus chloroplast, com... 137131 bp Cenchrus echinatus QL-PLN-00-007 612 bp View
MN078361.1 nt Cenchrus longispinus chloroplast, c... 137144 bp Cenchrus longispinus QL-PLN-00-007 612 bp View
MN102357.1 nt Lycium chinense chloroplast, comple... 155736 bp Lycium chinense QL-PLN-00-007 571 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.