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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AJ874976.1 nt Vangueria randii chloroplast trnT-t... 1714 bp Vangueria randii QL-PLN-00-007 556 bp View
AJ874977.1 nt Vangueria soutpansbergensis chlorop... 1730 bp Vangueria soutpansbergensis QL-PLN-00-007 556 bp View
AJ874978.1 nt Vangueria volkensii chloroplast trn... 1729 bp Vangueria volkensii QL-PLN-00-007 556 bp View
AL731605.3 nt Oryza sativa genomic DNA, chromosom... 167113 bp Oryza sativa Japonica Group QL-PLN-00-007 615 bp View
AM117350.1 nt Boholia sp. Bicknell 1561A chloropl... 1416 bp Boholia sp. Bicknell 1561A QL-PLN-00-007 569 bp View
AM117353.1 nt Coddia rudis chloroplast tRNA-Leu g... 1612 bp Coddia rudis QL-PLN-00-007 573 bp View
AM117355.1 nt Coptosperma sp. Razafimandimbison 5... 1727 bp Coptosperma sp. Razafimandimbison 525 QL-PLN-00-007 567 bp View
AM117359.1 nt Fadogia tetraquetra chloroplast tRN... 1664 bp Fadogia tetraquetra QL-PLN-00-007 552 bp View
AM117360.1 nt Gardenia volkensii subsp. spatulifo... 1685 bp Gardenia volkensii subsp. spatulifolia QL-PLN-00-007 550 bp View
AM117364.1 nt Hyperacanthus amoenus chloroplast t... 1620 bp Hyperacanthus amoenus QL-PLN-00-007 567 bp View
AM117366.1 nt Keetia gueinzii chloroplast tRNA-Le... 1517 bp Keetia gueinzii QL-PLN-00-007 550 bp View
AM117368.1 nt Kraussia floribunda chloroplast tRN... 1709 bp Kraussia floribunda QL-PLN-00-007 567 bp View
AM117370.1 nt Leptactina delagoensis chloroplast ... 1713 bp Leptactina delagoensis QL-PLN-00-007 567 bp View
AM117377.1 nt Pavetta lanceolata chloroplast tRNA... 1596 bp Pavetta lanceolata QL-PLN-00-007 567 bp View
AM117383.1 nt Robbrechtia grandifolia chloroplast... 1707 bp Robbrechtia grandifolia QL-PLN-00-007 567 bp View
AM117384.1 nt Rothmannia capensis chloroplast tRN... 1740 bp Rothmannia capensis QL-PLN-00-007 567 bp View
AM266912.1 nt Chlorochorion foetidum chloroplast ... 1748 bp Chlorochorion foetidum QL-PLN-00-007 595 bp View
AM266913.1 nt Chlorochorion monticola chloroplast... 1737 bp Chlorochorion monticola QL-PLN-00-007 595 bp View
AM266924.1 nt Otiophora parviflora chloroplast tr... 1758 bp Otiophora parviflora QL-PLN-00-007 610 bp View
AM266934.1 nt Paraknoxia parviflora chloroplast t... 1761 bp Paraknoxia parviflora QL-PLN-00-007 595 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.