Match details
| Record ID: |
AM117353.1 |
| Database: |
nt |
Go to original record |
| Description: |
Coddia rudis chloroplast tRNA-Leu gene, trnT-trnL intergenic spacer and trnL-trnF intergenic spacer, specimen voucher Bremer et al. 4279 (UPS) |
| Taxon: |
Coddia rudis |
| Original size: |
1612 bp |
View other 20492 matches for this method
| Predicted amplification details: |
| Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
| 0 |
0 |
713 |
1285 |
+ |
573 bp |
|
1 cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51 acccactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101 aaggggcaat tctgagccaa atcccgtttt ccgaaaccaa aggttcagaa
151 agtgaaaaag gataggtgca gagactcaac ggaagctgtt ctaacaaatg
201 gagttggctg cgttagtaga gaaatctttc catcgaaaat tccgaaagga
251 taaagtataa agtgaaggat aaacgtatat atacgtattg aatactatat
301 caaatgatta atgacgactc gactgaatct gtatttttta tatgaaaacg
351 gaagaattgg tgtgaataga ttccacattg aagaaagaat cgaatattca
401 ttgatcaaat gattcactcc atagtctgat agatcttttc aagaattgat
451 taatcggacg agaataaaga tagagtcccg ttctacatgt caatgtcggc
501 aacaatgaaa tttatagtaa gaggaaaatc cgtcgacttt aaaaatcgtg
551 agggttcaag tccctctatc ccc
| Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
| primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.58e-08 |
| primerB |
100.0 |
20 bp |
0 |
0 |
573 |
554 |
2.58e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.
