Match details
Record ID: |
AM117360.1 |
Database: |
nt |
Go to original record |
Description: |
Gardenia volkensii subsp. spatulifolia chloroplast tRNA-Leu gene, trnT-trnL intergenic spacer and trnL-trnF intergenic spacer, specimen voucher Bremer et al. 4262 (UPS) |
Taxon: |
Gardenia volkensii subsp. spatulifolia |
Original size: |
1685 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
754 |
1303 |
+ |
550 bp |
|
1 cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51 acccactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101 aaggggcaat tctgagccaa atcctatttt ccgaaaccaa aggtgaaaaa
151 gggataggtg cagagactca acggaagctg ttctaacaaa tggagttggc
201 tgcattagta gagaaatctt tccatcgaaa attccgaaag tataaagtga
251 aggataaacg tatatatacg tattgaatac tatatcaaat gattaatgac
301 gactcgactg aatctgtatt ttttatatga aaacggaaga gaatagattc
351 cacattgaag aaagaatcga atattcattg atcaaatgat tcactccata
401 gtctgataga tcttttcaag aattgattaa tcggacgaga ataaagatag
451 agtcccgttc tacatgtcaa tgtcggcaac aatgaaattt atagtaagag
501 gaaaatccgt cgactttaaa aatcgtgagg gttcaagtcc ctctatcccc
View other 5 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.47e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
550 |
531 |
2.47e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.