JRC GMO-Amplicons | EURL GMFF

Amplicon details

Amplicon:

550 bp

1     cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51    acccactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101   aaggggcaat tctgagccaa atcctatttt ccgaaaccaa aggtgaaaaa
151   gggataggtg cagagactca acggaagctg ttctaacaaa tggagttggc
201   tgcattagta gagaaatctt tccatcgaaa attccgaaag tataaagtga
251   aggataaacg tatatatacg tattgaatac tatatcaaat gattaatgac
301   gactcgactg aatctgtatt ttttatatga aaacggaaga gaatagattc
351   cacattgaag aaagaatcga atattcattg atcaaatgat tcactccata
401   gtctgataga tcttttcaag aattgattaa tcggacgaga ataaagatag
451   agtcccgttc tacatgtcaa tgtcggcaac aatgaaattt atagtaagag
501   gaaaatccgt cgactttaaa aatcgtgagg gttcaagtcc ctctatcccc

An identical amplicon is found in the following matches:

Record ID	Database	Record description	Record length	Taxon	Method	Amplicon size	Match details
AM117360.1	nt	Gardenia volkensii subsp. spatulifo...	1685 bp	Gardenia volkensii subsp. spatulifolia	QL-PLN-00-007	550 bp	View
KJ136956.1	nt	Gardenia volkensii voucher Luke 904...	1699 bp	Gardenia volkensii	QL-PLN-00-007	550 bp	View
KJ815504.1	nt	Gardenia aqualla voucher Kristensen...	1647 bp	Gardenia aqualla	QL-PLN-00-007	550 bp	View
KJ815510.1	nt	Gardenia cornuta voucher Andreasen ...	1660 bp	Gardenia cornuta	QL-PLN-00-007	550 bp	View
KJ815529.1	nt	Gardenia ternifolia voucher Lykke 8...	1620 bp	Gardenia ternifolia	QL-PLN-00-007	550 bp	View
KJ815530.1	nt	Gardenia thunbergia voucher Wall 15...	1637 bp	Gardenia thunbergia	QL-PLN-00-007	550 bp	View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.