Match details
Record ID: |
AM117384.1 |
Database: |
nt |
Go to original record |
Description: |
Rothmannia capensis chloroplast tRNA-Leu gene, trnT-trnL intergenic spacer and trnL-trnF intergenic spacer, specimen voucher Bremer et al. 4346 (UPS) |
Taxon: |
Rothmannia capensis |
Original size: |
1740 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
792 |
1358 |
+ |
567 bp |
|
1 cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51 acccactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101 aaggggcaat cctgagccaa atcccgtttt ccgaaaccaa aggttcagaa
151 agtgaaaaaa ggataggtgc agagactcaa cggaagctgt tctaacaaat
201 ggagttggct gcgttagtag agaaatcttt ccatctaaaa ttccgaaagg
251 ataaagtgac ggataaacgt atatatacgt attgaatact atatcaaatg
301 attaatcacg actcgactga atctgtattt tttatgtgaa agcggaagaa
351 ttggtgtgaa tagattccac attgaagaaa gaatcgaata ttcattgatc
401 aaatgattca ctccatagtc tgatagatct tttcaagaat tgattaatcg
451 gacgagaata aagatagagt cccgttctac atgtcaatgt cggcaacaat
501 gaaatttata gtaagaggaa aatccgtcga ctttaaaaat cgtgagggtt
551 caagtccctc tatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.55e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
567 |
548 |
2.55e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.