Match details
Record ID: |
AJ874977.1 |
Database: |
nt |
Go to original record |
Description: |
Vangueria soutpansbergensis chloroplast trnT-trnL IGS (partial), tRNA-Leu (UAA) gene and trnL-trnF IGS (partial), specimen voucher Bremer et al. 4324 (UPS) |
Taxon: |
Vangueria soutpansbergensis |
Original size: |
1730 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
807 |
1362 |
+ |
556 bp |
|
1 cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51 acccactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101 aaggggcaat cctgagccaa atcctgtttt ccgaaaccaa cggttcagaa
151 agtgaaaaag ggataggtgc agagactcga tggaagttgt tctaacaaat
201 ggagttggct gcgttagtaa agaaatcttt ccatcgaaaa ttccgaaagg
251 ataaaacaaa cgtatacgta ttcaatacta tatcaaatga ttaatgacga
301 ctcgactgaa tccgtatttt ttatatgaaa acggaagagt tggtgtgaat
351 agattccaca ttgaagaaag aatcgaatat tcattgatta aatgattcac
401 tccatagtct gatagatctt ttcaagaatt gattaatcgg acgagaataa
451 agatagagtc ccgttctaca tgtcaatgtc ggcaacaatg aaatttatag
501 taagaggaaa atccgtcgac tttaaaaatc gtgagggttc aagtccctct
551 atcccc
View other 3 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.50e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
556 |
537 |
2.50e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.