Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *

 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches

Gaps:
Mismatches:
* required field


Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MH593364.1 nt Fritillaria pallidiflora isolate GZ... 152073 bp Fritillaria pallidiflora QL-PLN-00-007 608 bp View
MH593365.1 nt Fritillaria pallidiflora isolate GZ... 152067 bp Fritillaria pallidiflora QL-PLN-00-007 608 bp View
MH593366.1 nt Fritillaria pallidiflora isolate GZ... 152073 bp Fritillaria pallidiflora QL-PLN-00-007 608 bp View
MH593367.1 nt Fritillaria usuriensis isolate GZDQ... 151571 bp Fritillaria usuriensis QL-PLN-00-007 605 bp View
MH593368.1 nt Fritillaria usuriensis isolate GZDQ... 151523 bp Fritillaria usuriensis QL-PLN-00-007 605 bp View
MH593369.1 nt Fritillaria usuriensis isolate GZDQ... 151552 bp Fritillaria usuriensis QL-PLN-00-007 605 bp View
MH603430.1 nt Musa basjoo isolate 89.0873 plastid... 133554 bp Musa basjoo QL-PLN-00-007 594 bp View
MH603432.1 nt Musa ornata isolate ITC0637 plastid... 133383 bp Musa ornata QL-PLN-00-007 594 bp View
MH603433.1 nt Musa sp. Zomlefer et al 2349 isolat... 132984 bp Musa sp. Zomlefer et al 2349 QL-PLN-00-007 594 bp View
MH627219.1 nt Cerastium arvense chloroplast, part... 148092 bp Cerastium arvense QL-PLN-00-007 594 bp View
MH647765.1 nt Lycianthes amatitlanensis voucher B... 1997 bp Lycianthes amatitlanensis QL-PLN-00-007 573 bp View
MH660710.1 nt Andropogon ivorensis isolate TK716 ... 139857 bp Andropogon ivorensis QL-PLN-00-007 525 bp View
MH757117.1 nt Haberlea rhodopensis mitochondrion,... 484138 bp Haberlea rhodopensis QL-PLN-00-007 555 bp View
MH820376.1 nt Miscanthus sacchariflorus strain 2T... 141337 bp Miscanthus sacchariflorus QL-PLN-00-007 526 bp View
MH820377.1 nt Miscanthus floridulus strain 3MS052... 141277 bp Miscanthus floridulus QL-PLN-00-007 526 bp View
MH820378.1 nt Miscanthus sinensis strain 4MF chlo... 141280 bp Miscanthus sinensis QL-PLN-00-007 526 bp View
MH820379.1 nt Miscanthus x giganteus strain 5MG c... 141334 bp Miscanthus x giganteus QL-PLN-00-007 526 bp View
MH884558.1 nt Plectranthus zeylanicus isolate P.z... 1612 bp Plectranthus zeylanicus QL-PLN-00-007 551 bp View
MH884559.1 nt Plectranthus zeylanicus isolate P.z... 1586 bp Plectranthus zeylanicus QL-PLN-00-007 551 bp View
MH884560.1 nt Plectranthus zeylanicus isolate P.z... 1613 bp Plectranthus zeylanicus QL-PLN-00-007 551 bp View


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.