Match details
Record ID: |
MH647765.1 |
Database: |
nt |
Go to original record |
Description: |
Lycianthes amatitlanensis voucher Bohs 2552 trnT-trnL intergenic spacer, partial sequence; tRNA-Leu (trnL) gene and trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Lycianthes amatitlanensis |
Original size: |
1997 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
709 |
1281 |
+ |
573 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acttactaag tgatcacttt caaattcaga gaaaccctgg aattaacaaa
101 aatgggcaat cctgagccaa atcctgtttt ctgaaaacaa ataaagattc
151 agaaaaaaag gataggtgca gagactcaat ggaagctatt ctaacaaatg
201 gagttaaatg tgttggtaga ggaatcttta catcgaaact tcagaaagaa
251 aaagaatgaa gtgaaggata aacgtatata catacgtatt gaatactata
301 tcaaatgatt aatgacgacc cgaatccgta tttttctatt tgaaaaaata
351 gaagaattgg tgtgaatcga ttctacattg aagaaagaat cgaatattca
401 ttgatcaaat cattcactcc atagtctgat agatcttttg aagaactgat
451 taatcggacg agaataaaga tagagtcccg ttctacatgt caataccggc
501 aacaatgaaa tttatagtaa gaggaaaatc cgtcgacttt aaaaatcgtg
551 agggttcaag tccctctatc ccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.58e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
573 |
554 |
2.58e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.