Match details
Record ID: |
MH820378.1 |
Database: |
nt |
Go to original record |
Description: |
Miscanthus sinensis strain 4MF chloroplast, complete genome. |
Taxon: |
Miscanthus sinensis |
Original size: |
141280 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
111294 |
111819 |
+ |
526 bp |
|
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51 acctgctaag tggtaacttc caaattcaga gaaaccctgg aatgaaaaat
101 gggcaatcct gagccaaatc cacttttttg aaaaaacaag tggttctcaa
151 actagaaccc aaaggaaaag gataggtgca gagactcaat ggaagctgtt
201 ctaacgaatc gaagtaataa cgattaatca cagaacccat attataatat
251 aggttcttta ttttattttt agaatgaaat taggaatgat tatgaaatag
301 aaaattcata atttttttag aattattgtg aatctattcc aatcgaatat
351 tgagtaatca aatccttcaa ttcattgttt tcgagatatt ttaaaaagtg
401 gattaatcgg acgaggataa agagagagtc ccattctaca tgtcaatact
451 gacaacaatg aaatttctag taaaaggaaa atccgtcgac tttataagtc
501 gtgagggttc aagtccctct atcccc
View other 15 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.37e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
526 |
507 |
2.37e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.