Match details
Record ID: |
MH593364.1 |
Database: |
nt |
Go to original record |
Description: |
Fritillaria pallidiflora isolate GZDQ23-1 chloroplast, complete genome. |
Taxon: |
Fritillaria pallidiflora |
Original size: |
152073 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
44891 |
45498 |
+ |
608 bp |
|
1 cgaaatcggt agacgctacg gacttgatta aattgagcct tggtatggaa
51 acctgctaag tgataacttc caaattcaga gaaaccccgg aattaaaaat
101 gggcaatcct gagccaaatc ttgattttga gaaaaagggt ttaatttata
151 gtttttataa tataaaacta caataaaaaa agataggtgc agagactcaa
201 tggaagctgt tctaacgaat gaagttgatt acgttgcgct ggtagccgga
251 atccttctat caaaattacg gagaggatgc ccgccctata tacgtatata
301 tacatactga catagtaaac aattgattaa tcgcggcccg aatctattat
351 aatatatata tatgaaaaat ttaagagtta ttgtaaatct attccatatt
401 ccaatcaaag tttaaggaag aatcgaaata ttcagtgatc aaattattca
451 ttccagagtc tgtatagatc ttttttaaaa ctgattattc ggacgagaat
501 aaagagagag tcccattcta cgtgtcaata ctgacaacaa tgaaatttat
551 agtaaaagga aaatccgtcg actttataag tcgtgagggt tcaagtccct
601 ctatcccc
View other 2 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.74e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
608 |
589 |
2.74e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.