Match details
Record ID: |
MH603430.1 |
Database: |
nt |
Go to original record |
Description: |
Musa basjoo isolate 89.0873 plastid, partial genome. |
Taxon: |
Musa basjoo |
Original size: |
133554 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
50082 |
50675 |
+ |
594 bp |
|
1 cgaaatcggt agacgctacg gacttgattg gattgagcct tagtatggaa
51 acctgctaag tggtaacttc caaattcaga gaaaccctgg aataaaaaat
101 gggcaatcct gagccaaatc cttattttga gaaaacaaag gtttataaaa
151 ctagaattta aaaggatagg tgcagagact caatggaagc tgttctaacg
201 aatggagttg actacgtttt gttggtagca ggaatccgtc tataaaaatt
251 acagaaaaga tggtcctata tacctaatac gtatgtatac atactgccat
301 atcaaacgat taatcatgac ccgaatctat tatattataa ttatatataa
351 ttataatatg aaaaattcag agttattatg aatccatttc aatggaagtt
401 gaaggaagaa tcgaatattc aattatgaaa tcattcattc cagagtttga
451 tagatctttt gaaaaactga ttaatcggac gagaataaag agagagtccc
501 attctacatg tcaataccga caacaatgaa atttatagta agaggaaaat
551 ccgtcgactt taaaaatcgt gagggttcaa gtccctctat cccc
View other 3 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.68e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
594 |
575 |
2.68e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.