Match details
Record ID: |
MH884558.1 |
Database: |
nt |
Go to original record |
Description: |
Plectranthus zeylanicus isolate P.zey.1 tRNA-Thr (trnT) gene, partial sequence; trnT-trnL intergenic spacer, tRNA-Leu (trnL) gene, and trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Plectranthus zeylanicus |
Original size: |
1612 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
725 |
1275 |
+ |
551 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccccgg aattaataaa
101 aatgggcaat cctgagccaa atcctgtttt ctcaaaacaa agattcacaa
151 aacgaaaagg ataggtgcag agactcaatg gaagctgttc taacaaatgg
201 gagttgactg cgctggtaga ggaatctttc catggaaact ttagaaagga
251 tgaaggataa acgcatctat tgaatactat atcaaatggt taatgatggc
301 ccgaatcttt taatatgaaa aaatggaaaa attggtgtga attgattcta
351 cgttgaagaa aaaatcgaat attcatcaac tcattcgctc catagtccga
401 tagatctttt aaagaactga ttaatcggac gagaataaag atagagtccc
451 attctacatg ctacatgtca atatcggcaa caatgaaatt tatagtaaga
501 ggaaaatccg tcgactttaa aaatcgtgag ggttcaagtc cctctatccc
551 c
View other 3 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.48e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
551 |
532 |
2.48e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.