Amplicon details

Amplicon:

551 bp
1     cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51    acctactaag tgataacttt caaattcaga gaaaccccgg aattaataaa
101   aatgggcaat cctgagccaa atcctgtttt ctcaaaacaa agattcacaa
151   aacgaaaagg ataggtgcag agactcaatg gaagctgttc taacaaatgg
201   gagttgactg cgctggtaga ggaatctttc catggaaact ttagaaagga
251   tgaaggataa acgcatctat tgaatactat atcaaatggt taatgatggc
301   ccgaatcttt taatatgaaa aaatggaaaa attggtgtga attgattcta
351   cgttgaagaa aaaatcgaat attcatcaac tcattcgctc catagtccga
401   tagatctttt aaagaactga ttaatcggac gagaataaag atagagtccc
451   attctacatg ctacatgtca atatcggcaa caatgaaatt tatagtaaga
501   ggaaaatccg tcgactttaa aaatcgtgag ggttcaagtc cctctatccc
551   c 

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
MH884559.1 nt Plectranthus zeylanicus isolate P.z... 1586 bp Plectranthus zeylanicus QL-PLN-00-007 551 bp View
MH884558.1 nt Plectranthus zeylanicus isolate P.z... 1612 bp Plectranthus zeylanicus QL-PLN-00-007 551 bp View
MH884560.1 nt Plectranthus zeylanicus isolate P.z... 1613 bp Plectranthus zeylanicus QL-PLN-00-007 551 bp View
MH884562.1 nt Plectranthus hadiensis isolate Kew ... 1627 bp Coleus hadiensis QL-PLN-00-007 551 bp View


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.