Match details
Record ID: |
MH593368.1 |
Database: |
nt |
Go to original record |
Description: |
Fritillaria usuriensis isolate GZDQ26-2 chloroplast, complete genome. |
Taxon: |
Fritillaria usuriensis |
Original size: |
151523 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
45009 |
45613 |
+ |
605 bp |
|
1 cgaaatcggt agacgctacg gacttgatta aattgagcct tggtatggaa
51 acctgctaag tgataacttc caaattcaga gaaaccccgg aattaaaaat
101 gggcaatcct gagccaaatc tttattttga gaaaaagggt ttaatttata
151 gtttttataa tataaaacta caataaaaaa agataggtgc agagactcaa
201 tggaagctgt tctaacgaat gaagttgatt acgttgcgct ggtagccgga
251 atccttctat caaaattacg gagaggatgc ccgccctata tacgtatata
301 tacatattga catagtaaac gattgattaa tcgcggcccg aatccattat
351 aatatatata tgaaaaatat aagagttatt gtaaatctat tccatattcc
401 aatcaaagtt taaggaagaa tcgaatattc agtgatcaaa ttattcattc
451 cagagtctgt atagatcttt ttaaaaactg attattcgga cgagaataaa
501 gagagagtcc cattctacgt gtcaataccg acaacaatga aatttatagt
551 aaaaggaaaa tccgtcgact ttataagtcg tgagggttca agtccctcta
601 tcccc
View other 7 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.73e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
605 |
586 |
2.73e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.