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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MH394380.1 nt Indosasa sinica chloroplast, comple... 139740 bp Indosasa sinica QL-PLN-00-007 614 bp View
MH394381.1 nt Indosasa sinica chloroplast, partia... 139948 bp Indosasa sinica QL-PLN-00-007 614 bp View
MH394382.1 nt Indosasa sinica chloroplast, comple... 139740 bp Indosasa sinica QL-PLN-00-007 614 bp View
MH394400.1 nt Meconopsis racemosa chloroplast, co... 153729 bp Meconopsis racemosa QL-PLN-00-007 604 bp View
MH394401.1 nt Meconopsis racemosa chloroplast, co... 153762 bp Meconopsis racemosa QL-PLN-00-007 604 bp View
MH394426.1 nt Hodgsonia macrocarpa chloroplast, p... 156120 bp Hodgsonia macrocarpa QL-PLN-00-007 582 bp View
MH394429.1 nt Hodgsonia macrocarpa chloroplast, p... 155055 bp Hodgsonia macrocarpa QL-PLN-00-007 582 bp View
MH410123.1 nt Ampelocalamus actinotrichus chlorop... 139754 bp Ampelocalamus actinotrichus QL-PLN-00-007 614 bp View
MH411148.1 nt Buddleja colvilei isolate GJ3 chlor... 154228 bp Buddleja colvilei QL-PLN-00-007 559 bp View
MH411150.1 nt Buddleja sessilifolia isolate GJ10 ... 154204 bp Buddleja sessilifolia QL-PLN-00-007 558 bp View
MH411151.1 nt Buddleja sessilifolia isolate GJ11 ... 154710 bp Buddleja sessilifolia QL-PLN-00-007 558 bp View
MH423067.1 nt Diphylleia sinensis chloroplast, co... 157375 bp Diphylleia sinensis QL-PLN-00-007 541 bp View
MH423068.1 nt Dysosma versipellis chloroplast, co... 156583 bp Dysosma versipellis QL-PLN-00-007 548 bp View
MH423071.1 nt Podophyllum peltatum chloroplast, c... 156871 bp Podophyllum peltatum QL-PLN-00-007 539 bp View
MH464896.1 nt Dictyanthus macvaughianus voucher E... 945 bp Dictyanthus macvaughianus QL-PLN-00-007 552 bp View
MH488956.1 nt Cenchrus purpureus isolate APBN-1 v... 137370 bp Cenchrus purpureus QL-PLN-00-007 613 bp View
MH558672.1 nt Coix lacryma-jobi cultivar Johyun c... 140863 bp Coix lacryma-jobi QL-PLN-00-007 524 bp View
MH569081.1 nt Festuca ovina plastid, complete genome. 133569 bp Festuca ovina QL-PLN-00-007 607 bp View
MH593342.1 nt Fritillaria cirrhosa isolate GZDQ1-... 151546 bp Fritillaria cirrhosa QL-PLN-00-007 607 bp View
MH593343.1 nt Fritillaria cirrhosa isolate GZDQ1-... 151546 bp Fritillaria cirrhosa QL-PLN-00-007 607 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.