Match details
Record ID: |
MH488956.1 |
Database: |
nt |
Go to original record |
Description: |
Cenchrus purpureus isolate APBN-1 voucher SUPG014 chloroplast, complete genome. |
Taxon: |
Cenchrus purpureus |
Original size: |
137370 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
47027 |
47639 |
+ |
613 bp |
|
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51 acctgctaag tgataacttc caaattcaga gaaaccctgg aatgaaaaat
101 gggcaatcct gagccaaatc ccttttttga aaaaacaagt ggttctaaaa
151 ctggaaccca aaggaaaagg ataggtgcag agactcaatg gaagctgttc
201 taacgaatcg aagtaattac gttgtgttgg taggggaact ccctcgaaat
251 actagaaaga agggctttat acatttaata cacacgtata gatactgaca
301 tagtaaacga ttaatcacag aacccctatc ataatatagg ttctttattt
351 tatatttttt tctagaatga aattaggaat gattatgaaa tagaaaattc
401 tgaatttttt tagaattatt gtgaatccat tccaatcgaa tattgagtaa
451 tcaaatcctt caattcattg ttttgagatc aaaagtggat taatcgaacg
501 aggataaaga gagagtccca ttctacatgt caatactgac aacaatgaaa
551 tttctagtaa aaggaaaatc cgtcgacttt ataagtcgtg agggttcaag
601 tccctctatc ccc
View other 11 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.76e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
613 |
594 |
2.76e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.