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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon details

Amplicon:

 613 bp 
1     cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51    acctgctaag tgataacttc caaattcaga gaaaccctgg aatgaaaaat
101   gggcaatcct gagccaaatc ccttttttga aaaaacaagt ggttctaaaa
151   ctggaaccca aaggaaaagg ataggtgcag agactcaatg gaagctgttc
201   taacgaatcg aagtaattac gttgtgttgg taggggaact ccctcgaaat
251   actagaaaga agggctttat acatttaata cacacgtata gatactgaca
301   tagtaaacga ttaatcacag aacccctatc ataatatagg ttctttattt
351   tatatttttt tctagaatga aattaggaat gattatgaaa tagaaaattc
401   tgaatttttt tagaattatt gtgaatccat tccaatcgaa tattgagtaa
451   tcaaatcctt caattcattg ttttgagatc aaaagtggat taatcgaacg
501   aggataaaga gagagtccca ttctacatgt caatactgac aacaatgaaa
551   tttctagtaa aaggaaaatc cgtcgacttt ataagtcgtg agggttcaag
601   tccctctatc ccc

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
KX756179.1 nt Cenchrus americanus chloroplast, co... 138172 bp Cenchrus americanus QL-PLN-00-007 613 bp View
PP098453.1 nt Cenchrus americanus isolate PI52738... 138170 bp Cenchrus americanus QL-PLN-00-007 613 bp View
PP159197.1 nt Cenchrus polystachios chloroplast, ... 138171 bp Cenchrus polystachios QL-PLN-00-007 613 bp View
PP098454.1 nt Cenchrus americanus isolate PI53706... 138168 bp Cenchrus americanus QL-PLN-00-007 613 bp View
PP098455.1 nt Cenchrus americanus isolate PI52652... 138171 bp Cenchrus americanus QL-PLN-00-007 613 bp View
PP098456.1 nt Cenchrus americanus isolate PI52161... 138171 bp Cenchrus americanus QL-PLN-00-007 613 bp View
PP098457.1 nt Cenchrus americanus isolate PI58702... 138141 bp Cenchrus americanus QL-PLN-00-007 613 bp View
PP098458.1 nt Cenchrus americanus isolate PI25065... 138169 bp Cenchrus americanus QL-PLN-00-007 613 bp View
PP098460.1 nt Cenchrus americanus isolate PI18633... 138187 bp Cenchrus americanus QL-PLN-00-007 613 bp View
PP098461.1 nt Cenchrus americanus isolate Tifleaf... 138108 bp Cenchrus americanus QL-PLN-00-007 613 bp View
MH488956.1 nt Cenchrus purpureus isolate APBN-1 v... 137370 bp Cenchrus purpureus QL-PLN-00-007 613 bp View
MN180104.1 nt Cenchrus americanus chloroplast, co... 138119 bp Cenchrus americanus QL-PLN-00-007 613 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.