Match details
Record ID: |
MH558672.1 |
Database: |
nt |
Go to original record |
Description: |
Coix lacryma-jobi cultivar Johyun chloroplast, complete genome. |
Taxon: |
Coix lacryma-jobi |
Original size: |
140863 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
49222 |
49745 |
+ |
524 bp |
|
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51 acctgctaag tggtaacttc caaattcaga gaaaccctgg aatgaaaaat
101 gggcaatcct gagccaaatc ccttttttga aaaacaagtg gttctcaaac
151 tagaacccaa aggaaaagga taggtgcaga gactcaatgg aagctgttct
201 aacgaatcga agtaataacg attaatcaca gaacccatat tataatatag
251 gttctttatt ttatttttag aatgaaatta ggaatgatta tgaaatagaa
301 aattcataat ttttttagaa ttattgtgaa tctattccaa tcgaatattg
351 agtaatcaaa tccttcaatt catagttttc gagatctttt aaaaagtgga
401 ttaatcggac gaggataaag agagagtccc attctacatg tcaatactga
451 caacaatgaa atttctagta aaaggaaaat ccgtcgactt tataagtcgt
501 gagggttcaa gtccctctat cccc
View other 6 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.36e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
524 |
505 |
2.36e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.