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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon details

Amplicon:

 524 bp 
1     cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51    acctgctaag tggtaacttc caaattcaga gaaaccctgg aatgaaaaat
101   gggcaatcct gagccaaatc ccttttttga aaaacaagtg gttctcaaac
151   tagaacccaa aggaaaagga taggtgcaga gactcaatgg aagctgttct
201   aacgaatcga agtaataacg attaatcaca gaacccatat tataatatag
251   gttctttatt ttatttttag aatgaaatta ggaatgatta tgaaatagaa
301   aattcataat ttttttagaa ttattgtgaa tctattccaa tcgaatattg
351   agtaatcaaa tccttcaatt catagttttc gagatctttt aaaaagtgga
401   ttaatcggac gaggataaag agagagtccc attctacatg tcaatactga
451   caacaatgaa atttctagta aaaggaaaat ccgtcgactt tataagtcgt
501   gagggttcaa gtccctctat cccc

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
MT471094.1 nt Coix lacryma-jobi var. stenocarpa i... 140863 bp Coix lacryma-jobi var. stenocarpa QL-PLN-00-007 524 bp View
MT471095.1 nt Coix lacryma-jobi var. maxima isola... 140864 bp Coix lacryma-jobi var. maxima QL-PLN-00-007 524 bp View
MT471096.1 nt Coix lacryma-jobi var. ma-yuen isol... 140864 bp Coix lacryma-jobi var. ma-yuen QL-PLN-00-007 524 bp View
MT471101.1 nt Coix lacryma-jobi var. ma-yuen isol... 140860 bp Coix lacryma-jobi var. ma-yuen QL-PLN-00-007 524 bp View
MT471102.1 nt Coix lacryma-jobi var. puellarum is... 140863 bp Coix lacryma-jobi var. puellarum QL-PLN-00-007 524 bp View
KY596160.1 nt Coix lacryma-jobi chloroplast, comp... 140863 bp Coix lacryma-jobi QL-PLN-00-007 524 bp View
MH558672.1 nt Coix lacryma-jobi cultivar Johyun c... 140863 bp Coix lacryma-jobi QL-PLN-00-007 524 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.