Match details
Record ID: |
MH394426.1 |
Database: |
nt |
Go to original record |
Description: |
Hodgsonia macrocarpa chloroplast, partial genome. |
Taxon: |
Hodgsonia macrocarpa |
Original size: |
156120 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
48599 |
49180 |
+ |
582 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccctgg aattaaaaat
101 gggcaatcct gagccaaatc ctttttccga aaacaaaaaa aaagggtagg
151 tgcagagact caatggaaga tgttctaaca aatggagttg actacgttgc
201 gttagtaaag gaatgaatcc ttctatcgaa actccagaaa agatgaaaga
251 taaacgtatt acgtacggaa atactatttg attaatgaca acccgaatct
301 ctattttttt tttttataaa aaattatata taaaaatgaa cgaattgttc
351 tgaatcgatt ccaatatctc caagttgaaa aaagaatcga atattcattg
401 atcaaatcat ttactccatc atacatagtc tgatagatct tttgaagaac
451 taattaatca gatgcgaata gaataaagat agagtcccat tctacatgtc
501 aataccgaca aaaatgaaat ttctagtaag aggaaaatcc gtcgactttt
551 aaaatcgtga gggttcaagt ccctctatcc cc
View other 1 match with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.62e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
582 |
563 |
2.62e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.