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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KU291494.1 nt Chasmanthium laxum var. sessiliflor... 140892 bp Chasmanthium laxum subsp. sessiliflorum QL-PLN-00-007 617 bp View
KU291497.1 nt Diheteropogon amplectens var. catan... 139700 bp Diheteropogon amplectens var. catangensis QL-PLN-00-007 529 bp View
KU523577.1 nt Chimonocalamus sp. Clark & Reiners ... 139682 bp Chimonocalamus sp. Clark & Reiners s.n. QL-PLN-00-007 614 bp View
KU523578.1 nt Shibataea kumasaca voucher ISC<USA-... 139717 bp Shibataea kumasaca QL-PLN-00-007 613 bp View
KU569967.1 nt Bergbambos tessellata voucher ISC<U... 139441 bp Bergbambos tessellata QL-PLN-00-007 614 bp View
KU569968.1 nt Fargesia nitida voucher ISC<USA-IA>... 139559 bp Fargesia nitida QL-PLN-00-007 614 bp View
KU569969.1 nt Kuruna debilis voucher ISC<USA-IA>:... 118047 bp Kuruna debilis QL-PLN-00-007 614 bp View
KU569972.1 nt Oldeania alpina voucher ISC<USA-IA>... 139602 bp Oldeania alpina QL-PLN-00-007 614 bp View
KU569973.1 nt Phyllostachys aurea voucher Attigal... 139695 bp Phyllostachys aurea QL-PLN-00-007 614 bp View
KU569975.1 nt Sasa veitchii voucher ISC<USA-IA>:C... 139731 bp Sasa veitchii QL-PLN-00-007 614 bp View
KU705873.1 nt Oryza sativa Indica Group cultivar ... 134493 bp Oryza sativa Indica Group QL-PLN-00-007 615 bp View
KU719763.1 nt Solanum glabratum voucher Miyazaki ... 1562 bp Solanum glabratum QL-PLN-00-007 571 bp View
KU724131.1 nt Phyllostegia waimeae strain HI0327 ... 150137 bp Phyllostegia waimeae QL-PLN-00-007 568 bp View
KU724135.1 nt Stenogyne sessilis strain HI0367 ch... 150120 bp Stenogyne sessilis QL-PLN-00-007 563 bp View
KU724137.1 nt Haplostachys linearifolia strain JF... 150129 bp Haplostachys linearifolia QL-PLN-00-007 563 bp View
KU726550.2 nt Bienertia sinuspersici chloroplast,... 153472 bp Bienertia sinuspersici QL-PLN-00-007 601 bp View
KU750613.1 nt Sinosenecio albonervius voucher 080... 2396 bp Sinosenecio albonervius QL-PLN-00-007 528 bp View
KU750636.1 nt Sinosenecio hupingshanensis voucher... 2398 bp Sinosenecio hupingshanensis QL-PLN-00-007 528 bp View
KU750660.1 nt Synotis alata voucher R396 trnT-UGU... 2293 bp Synotis alata QL-PLN-00-007 535 bp View
KU763487.2 nt Poa fibrifera voucher Peterson et a... 1809 bp Poa fibrifera QL-PLN-00-007 616 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.