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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KT124240.1 nt Pinguicula vulgaris subsp. bicolor ... 1580 bp Pinguicula vulgaris subsp. bicolor QL-PLN-00-007 559 bp View
KT124248.1 nt Pinguicula vulgaris subsp. bicolor ... 1579 bp Pinguicula vulgaris subsp. bicolor QL-PLN-00-007 558 bp View
KT124249.1 nt Pinguicula bohemica isolate BO_SH_a... 1579 bp Pinguicula bohemica QL-PLN-00-007 557 bp View
KT124261.1 nt Pinguicula vulgaris subsp. vulgaris... 1579 bp Pinguicula vulgaris subsp. vulgaris QL-PLN-00-007 558 bp View
KT124269.1 nt Pinguicula vulgaris subsp. vulgaris... 1580 bp Pinguicula vulgaris subsp. vulgaris QL-PLN-00-007 558 bp View
KT124270.1 nt Pinguicula vulgaris subsp. vulgaris... 1580 bp Pinguicula vulgaris subsp. vulgaris QL-PLN-00-007 558 bp View
KT182634.2 nt Crescentia cujete chloroplast, part... 154662 bp Crescentia cujete QL-PLN-00-007 573 bp View
KT220685.1 nt Perilla frutescens var. acuta vouch... 152588 bp Perilla frutescens var. acuta QL-PLN-00-007 566 bp View
KT220686.1 nt Perilla frutescens f. crispidiscolo... 152598 bp Perilla frutescens f. crispidiscolor QL-PLN-00-007 566 bp View
KT220689.1 nt Perilla frutescens var. frutescens ... 152598 bp Perilla frutescens var. frutescens QL-PLN-00-007 566 bp View
KT220690.1 nt Perilla citriodora voucher B17 chlo... 152602 bp none QL-PLN-00-007 566 bp View
KT220692.1 nt Perilla setoyensis chloroplast, com... 152607 bp none QL-PLN-00-007 565 bp View
KT257574.1 nt Musa acuminata subsp. malaccensis i... 971 bp Musa acuminata subsp. malaccensis QL-PLN-00-007 594 bp View
KT257578.1 nt Musa acuminata subsp. siamea isolat... 971 bp Musa acuminata subsp. siamea QL-PLN-00-007 594 bp View
KT257588.1 nt Musa itinerans isolate SS&JS 175 Ho... 956 bp Musa itinerans QL-PLN-00-007 594 bp View
KT257590.1 nt Musa ornata isolate SS&JS 169 Bua S... 991 bp Musa ornata QL-PLN-00-007 594 bp View
KT257604.1 nt Musa nanensis isolate SS&JS 473 Sri... 1002 bp Musa nanensis QL-PLN-00-007 594 bp View
KT279362.1 nt Dichanthium sericeum isolate 612 tR... 1587 bp Dichanthium sericeum QL-PLN-00-007 530 bp View
KT279365.1 nt Dichanthium annulatum isolate 047 t... 1584 bp Dichanthium annulatum QL-PLN-00-007 527 bp View
KT279367.1 nt Capillipedium spicigerum isolate 37... 1599 bp Capillipedium spicigerum QL-PLN-00-007 525 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.