Match details
Record ID: |
KT279365.1 |
Database: |
nt |
Go to original record |
Description: |
Dichanthium annulatum isolate 047 tRNA-Thr gene, partial sequence; trnT-trnL intergenic spacer and tRNA-Leu gene, complete sequence; and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Dichanthium annulatum |
Original size: |
1584 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
747 |
1273 |
+ |
527 bp |
|
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51 acctgctaag tggtaacttc caaattcaga gaaaccctgg aatgaaaaat
101 gggcaatcct gagccaaatc ccttttttga aaaaacaagc ggttctcaaa
151 ctagaaccca aaggaaaagg ataggtgcag agactcaatg gaagctgttc
201 taacgaatcg aagtaataac gattaatcac agaacccata ttataatata
251 taggttcttt attttatttt tagaatgaaa ttaggaatga ttatgaaata
301 gaaaattcat aattttttga gaattattgt gaatctattc caatcgaata
351 ttgagtaatc aaatccttca attcattgtt ttcgagatct tttaaaaagt
401 ggattaatcg gacgaggata aagagagagt cccattctac atgtcaatac
451 tgacaacaat gaaatttcta gtaaaaagaa aatccgtcga ctttataagt
501 cgtgagggtt caagtccctc tatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.37e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
527 |
508 |
2.37e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.