Match details
Record ID: |
KT124249.1 |
Database: |
nt |
Go to original record |
Description: |
Pinguicula bohemica isolate BO_SH_a trnT-trnL intergenic spacer, partial sequence; tRNA-Leu (trnL) gene and trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Pinguicula bohemica |
Original size: |
1579 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
680 |
1236 |
+ |
557 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 cctactaagt gataactttc aaattcagag aaaccccgga attaataaaa
101 atgggcaatc ctgagccaaa tcctgttttc tcaaaagaaa ggttccgaaa
151 acgaaaaaaa aaaaaaggat aggtgcagag actcaatgga agctgttcta
201 acaaatgggg ttgaccgcga tggtagagga atctttccgc cgaaacttca
251 gagaggatca aggataaaca tatctattga atactatatc aaatgattac
301 tgatggcacg aatctctatt tttatatgaa aaatggaaga attggtgtga
351 attgattcca cattgaagaa aaatcgaata tttattcatc aaaccattca
401 ctccatagtc cgatatacct tttaacgaac tgatcaatcg gacaagaata
451 aagatagagt cccattctac atgtcaatac cggcaacaat gcaatttata
501 gtaagaggaa aatccgtcga ctttaaaaat cgtgagggtt caagtccctc
551 tatcccc
View other 3 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.51e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
557 |
538 |
2.51e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.