Match details
Record ID: |
KT220690.1 |
Database: |
nt |
Go to original record |
Description: |
Perilla citriodora voucher B17 chloroplast, complete genome. |
Taxon: |
none |
Original size: |
152602 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
47013 |
47578 |
+ |
566 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccccgg aattaataaa
101 aatgggcaat cctgagccaa atcctgtttt tgttttctca aaacaaaggt
151 tcaaaaaacg aaaaaaagga taggtgcaga gactcaatgg aagctgttct
201 aacaaatgga gttgattgca ctgcactggt agaggaatct ttccctggaa
251 actttagaaa ggatgaagga taaacgcatc tagtgaatac tatatcaaat
301 gattaatgat gggcccgaat ctgttttttt ttttaatatg aaaaatggaa
351 aaatttgtgt gaattgattc cacgttgaag aaaaaattga atattcatca
401 cctcattcac tccatagtcc gatagttctt ttaaagaact gattaatcgg
451 acgagaataa agatagagtc ccattctaca tgtcaatacc ggcaacaatg
501 aaatttatag taagaggaaa atccgtcgac tttaaaaatc gtgagggttc
551 aagtccctct atcccc
View other 4 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.55e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
566 |
547 |
2.55e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.