Match details
Record ID: |
KT124248.1 |
Database: |
nt |
Go to original record |
Description: |
Pinguicula vulgaris subsp. bicolor isolate BI_CZ_c trnT-trnL intergenic spacer, partial sequence; tRNA-Leu (trnL) gene and trnL-trnF intergenic spacer, complete sequence; and tRNA-Phe (trnF) gene, partial sequence; chloroplast. |
Taxon: |
Pinguicula vulgaris subsp. bicolor |
Original size: |
1579 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
679 |
1236 |
+ |
558 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 cctactaagt gataactttc aaattcagag aaaccccgga attaataaaa
101 atgggcaatc ctgagccaaa tcctgttttc tcaaaagaaa ggttccgaaa
151 acgaaaaaaa aaaaaaagga taggtgcaga gactcaatgg aagctgttct
201 aacaaatggg gttgaccgcg atggtagagg aatctttccg ccgaaacttc
251 agagaggatc aaggataaac atatctattg aatactatat caaatgatta
301 ctgatggcac gaatctctat ttttatatga aaaatggaag aattggtgtg
351 aattgattcc acattgaaga aaaatcgaat atttattcat caaaccattc
401 actccatagt ccgatatacc ttttaacgaa ctgatcaatc ggacaagaat
451 aaagatagag tcccattcta catgtcaata ccggcaacaa tgcaatttat
501 agtaagagga aaatccgtcg actttaaaaa tcgtgagggt tcaagtccct
551 ctatcccc
View other 5 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.51e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
558 |
539 |
2.51e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.