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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KP699015.1 nt Vicia amoena isolate L-F_SY2 tRNA-L... 684 bp Vicia amoena QL-PLN-00-007 526 bp View
KP699016.1 nt Vicia amoena isolate L-F_SY3 tRNA-L... 684 bp Vicia amoena QL-PLN-00-007 526 bp View
KP699017.1 nt Vicia amoena isolate L-F_SY4 tRNA-L... 684 bp Vicia amoena QL-PLN-00-007 526 bp View
KP699018.1 nt Vicia amoena isolate L-F_SY5 tRNA-L... 684 bp Vicia amoena QL-PLN-00-007 526 bp View
KP699019.1 nt Vicia unijuga isolate L-F_WTC1 tRNA... 684 bp Vicia unijuga QL-PLN-00-007 526 bp View
KP699020.1 nt Vicia unijuga isolate L-F_WTC2 tRNA... 684 bp Vicia unijuga QL-PLN-00-007 526 bp View
KP699021.1 nt Vicia unijuga isolate L-F_WTC3 tRNA... 684 bp Vicia unijuga QL-PLN-00-007 526 bp View
KP699022.1 nt Vicia unijuga isolate L-F_WTC4 tRNA... 684 bp Vicia unijuga QL-PLN-00-007 526 bp View
KP699023.1 nt Vicia unijuga isolate L-F_WTC5 tRNA... 684 bp Vicia unijuga QL-PLN-00-007 526 bp View
KP718628.1 nt Scrophularia takesimensis isolate P... 152436 bp Scrophularia takesimensis QL-PLN-00-007 564 bp View
KP756701.1 nt Cestrum elegans isolate R016 trnT-t... 1741 bp Cestrum elegans QL-PLN-00-007 576 bp View
KP901228.1 nt Prolobus nitidulus voucher R.P.Oliv... 863 bp Prolobus nitidulus QL-PLN-00-007 525 bp View
KP966115.1 nt Zea mays subsp. mays cultivar inbre... 140457 bp Zea mays subsp. mays QL-PLN-00-007 532 bp View
KP966116.1 nt Zea mays subsp. mays cultivar inbre... 140534 bp Zea mays subsp. mays QL-PLN-00-007 532 bp View
KP966117.1 nt Zea mays subsp. mays cultivar inbre... 140479 bp Zea mays subsp. mays QL-PLN-00-007 532 bp View
KR233163.2 nt Scutellaria baicalensis chloroplast... 152731 bp Scutellaria baicalensis QL-PLN-00-007 565 bp View
KR233284.1 nt Trillium smallii tRNA-Leu (trnL) ge... 1043 bp Trillium smallii QL-PLN-00-007 595 bp View
KR259141.1 nt Amorimia concinna voucher 9292(NY) ... 985 bp Amorimia concinna QL-PLN-00-007 597 bp View
KR259142.1 nt Amorimia septentrionalis voucher 11... 1094 bp Amorimia septentrionalis QL-PLN-00-007 597 bp View
KR259146.1 nt Amorimia pellegrinii voucher 612(HU... 1111 bp Amorimia pellegrinii QL-PLN-00-007 605 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.