Match details
Record ID: |
KR233163.2 |
Database: |
nt |
Go to original record |
Description: |
Scutellaria baicalensis chloroplast, complete genome. |
Taxon: |
Scutellaria baicalensis |
Original size: |
152731 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
47786 |
48350 |
+ |
565 bp |
|
1 cgaaatcggt agacgctacg gacttaatta gattgagcct tgatgtggga
51 aacctactaa gtgataactt tcaaattcag agaacccccg gaattaataa
101 aaatgggtga tcctgatcca aatcctgttt tctgaaaacc tgaaaacaaa
151 ggctcaaaaa acgaaaaatg ggataggtgc agagactcaa tggaagctgt
201 tctaacaaat ggagttggct gcgttgttag aggaatcctt tccgcggaaa
251 cttcagaaag gatgaaggat aaacgtatct attgaatact atatcaaatg
301 attaatgatg gcccgaatcc gtatttttga atatgaaaaa acggaagaat
351 cggtgtgaat tgattccaca ttgaaaaaaa atcgaatatt cattcatcaa
401 atcattcact ccacggtcca ataggtcttt taaagaacta attaattgga
451 cgagaataaa gatagagtcc cattctacat gtcaataccg gcaacaatga
501 aatttatagt aagaggaaaa tccgtcgact ttaaaaatcg tgagggttca
551 agtccctcta tcccc
View other 8 matches with an identical amplicon
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.54e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
565 |
546 |
2.54e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.