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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KM881637.1 nt Oryza barthii isolate 86481 chlorop... 134640 bp Oryza barthii QL-PLN-00-007 615 bp View
KM881638.1 nt Oryza glaberrima isolate 104040 chl... 134606 bp Oryza glaberrima QL-PLN-00-007 615 bp View
KM881642.1 nt Oryza longistaminata isolate 81953 ... 134563 bp Oryza longistaminata QL-PLN-00-007 615 bp View
KP319242.1 nt Chusquea sp. PFM-2015 plastid, comp... 138257 bp Chusquea sp. PFM-2015 QL-PLN-00-007 618 bp View
KP326385.1 nt Salvia multicaulis voucher mu.44 tR... 897 bp Salvia multicaulis QL-PLN-00-007 554 bp View
KP326387.1 nt Salvia hydrangea voucher hy.26 tRNA... 904 bp Salvia hydrangea QL-PLN-00-007 560 bp View
KP326388.1 nt Salvia ceratophylla voucher ce.14 t... 912 bp Salvia ceratophylla QL-PLN-00-007 568 bp View
KP326389.1 nt Salvia moorcroftiana voucher mo.39 ... 896 bp Salvia moorcroftiana QL-PLN-00-007 552 bp View
KP326390.1 nt Salvia nemorosa voucher ne.17 tRNA-... 915 bp Salvia nemorosa QL-PLN-00-007 567 bp View
KP326391.1 nt Salvia reuteriana voucher re.1 tRNA... 900 bp Salvia reuteriana QL-PLN-00-007 554 bp View
KP326392.1 nt Salvia sharifii voucher sh.2 tRNA-L... 897 bp Salvia sharifii QL-PLN-00-007 553 bp View
KP326393.1 nt Salvia sharifii voucher sh.3 tRNA-L... 896 bp Salvia sharifii QL-PLN-00-007 552 bp View
KP326394.1 nt Salvia syriaca voucher sy.33 tRNA-L... 897 bp Salvia syriaca QL-PLN-00-007 553 bp View
KP326395.1 nt Salvia virgata voucher vi.20 tRNA-L... 908 bp Salvia virgata QL-PLN-00-007 569 bp View
KP326396.1 nt Salvia virgata voucher vi.21 tRNA-L... 908 bp Salvia virgata QL-PLN-00-007 568 bp View
KP326397.1 nt Salvia sclarea voucher sc.24 tRNA-L... 897 bp Salvia sclarea QL-PLN-00-007 553 bp View
KP326398.1 nt Salvia atropatana voucher at.40 tRN... 897 bp Salvia atropatana QL-PLN-00-007 553 bp View
KP326399.1 nt Salvia limbata voucher li.36 tRNA-L... 903 bp Salvia limbata QL-PLN-00-007 559 bp View
KP684145.1 nt Phyllostachys edulis chloroplast, c... 98908 bp Phyllostachys edulis QL-PLN-00-007 613 bp View
KP698989.1 nt Vicia ramuliflora isolate L-F_BY1 t... 684 bp Vicia ramuliflora QL-PLN-00-007 526 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.