Match details
Record ID: |
KP319242.1 |
Database: |
nt |
Go to original record |
Description: |
Chusquea sp. PFM-2015 plastid, complete genome. |
Taxon: |
Chusquea sp. PFM-2015 |
Original size: |
138257 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
47673 |
48290 |
+ |
618 bp |
|
1 cgaaatcggt agacgctacg gacttaattg tattgagcct tggtatggaa
51 acctgctaag tggtaacttc caaattcaga gaaaccctgg aattaaaaaa
101 gggcaatcct gagccaaatc cgtgttttga gaaaacaagt ggttctcaaa
151 ctagaatcca aaggaaaagg ataggtgcag agactcaatg gaagctgttc
201 taacgaatcg agttgattac gttgtgttgg tagtggaact ccctctaaat
251 tagagaaagt aaggggttta tacatctaat tcacacgtat agatactgac
301 atagcaaacg attaatcaca gaacccatat cataacataa tataggttct
351 ttattctttt ttagaatgaa attaggaatg attttgaaat agaaaattca
401 gaattttttt ggaattattg tgaatccatt ccaatctaat attgaataat
451 caaatccttc aattcttagt tttcgagatc ttttaaaaag tggattaatc
501 agacgaggat aaagagagag tcccattcta catgtcaata ctgacaacaa
551 tgaaatttct agtaaaagga aaatccgtcg actttataag tcgtgagggt
601 tcaagtccct ctatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.78e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
618 |
599 |
2.78e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.