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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AJ492301.1 nt Ramonda myconi chloroplast tRNA-Leu... 958 bp Ramonda myconi QL-PLN-00-007 556 bp View
AJ492302.1 nt Rhabdothamnopsis sinensis chloropla... 957 bp Rhabdothamnopsis sinensis QL-PLN-00-007 553 bp View
AJ492303.1 nt Saintpaulia velutina chloroplast tR... 939 bp Streptocarpus ionanthus subsp. velutinus QL-PLN-00-007 541 bp View
AJ492304.1 nt Streptocarpus holstii chloroplast t... 946 bp Streptocarpus holstii QL-PLN-00-007 546 bp View
AJ492305.1 nt Streptocarpus rexii chloroplast tRN... 870 bp Streptocarpus rexii QL-PLN-00-007 537 bp View
AJ492308.1 nt Lenbrassia australiana chloroplast ... 971 bp Lenbrassia australiana QL-PLN-00-007 561 bp View
AJ492309.1 nt Sarmienta scandens chloroplast tRNA... 971 bp Sarmienta scandens QL-PLN-00-007 561 bp View
AJ550525.1 nt Limosella grandiflora chloroplast t... 1598 bp Limosella grandiflora QL-PLN-00-007 566 bp View
AJ550527.1 nt Lyperia tristis chloroplast tRNA-Le... 1656 bp Lyperia tristis QL-PLN-00-007 558 bp View
AJ550528.1 nt Lyperia tristis chloroplast tRNA-Le... 1660 bp Lyperia tristis QL-PLN-00-007 558 bp View
AJ551271.1 nt Buddleja polystachya chloroplast tR... 1363 bp Buddleja polystachya QL-PLN-00-007 565 bp View
AJ586051.1 nt Selago dolichonema chloroplast trnT... 1652 bp Selago dolichonema QL-PLN-00-007 571 bp View
AJ586052.1 nt Selago scabribractea chloroplast tr... 1578 bp Selago scabribractea QL-PLN-00-007 571 bp View
AJ586053.1 nt Microdon orbicularis chloroplast tr... 1735 bp Microdon orbicularis QL-PLN-00-007 571 bp View
AJ586054.1 nt Selago geniculata chloroplast trnT-... 1732 bp Selago geniculata QL-PLN-00-007 571 bp View
AJ586055.1 nt Selago longiflora chloroplast trnT-... 1696 bp Selago longiflora QL-PLN-00-007 571 bp View
AJ586056.1 nt Selago nachtigalii chloroplast trnT... 1728 bp Selago nachtigalii QL-PLN-00-007 570 bp View
AJ586060.1 nt Microdon polygaloides chloroplast t... 1749 bp Microdon polygaloides QL-PLN-00-007 570 bp View
AJ586061.1 nt Selago fruticosa chloroplast trnT-t... 1565 bp Selago fruticosa QL-PLN-00-007 571 bp View
AJ586062.1 nt Selago luxurians chloroplast trnT-t... 1550 bp Selago luxurians QL-PLN-00-007 570 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.