Match details
Record ID: |
AJ550528.1 |
Database: |
nt |
Go to original record |
Description: |
Lyperia tristis chloroplast tRNA-Leu (UAA) gene, specimen voucher Hedberg 5640 (UPS) |
Taxon: |
Lyperia tristis |
Original size: |
1660 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
694 |
1251 |
+ |
558 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgataacttt caaattcaga gaaaccccgg aattaataaa
101 aaggggcaat cctgagccaa atcctgtttt ctcaaaacaa aggttcagaa
151 ggcaaaataa aggataggtg cagagactca atggaagctg ttctaacaaa
201 tggagttgac tgcgttggta gaggaatcca tttcatcaaa cttcagaaag
251 ggtaatggat aaacgtatct attgaatact atatcaaatg attaaggccc
301 gaactgtgta gttttttata taaaaaatgg aaaaatgggt gtgaatttat
351 ttcagcgttg aagaaagaat caaataaaat attcattcat caaatcattc
401 actccatagt ctgatagatc ttttaaagaa ctgattaatc ggacgagaat
451 aaagatagag tcccattcta catgtcaata ccggcaacaa tgaaatttat
501 agtaagagga aaatccgtcg attttaaaaa tcgtgagggt tcaagtccct
551 ctatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.51e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
558 |
539 |
2.51e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.