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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
JQ958284.1 nt Vangueria bowkeri voucher Lemaire &... 1703 bp Vangueria bowkeri QL-PLN-00-007 556 bp View
JQ958285.1 nt Vangueria dryadum voucher Lemaire &... 1703 bp Vangueria dryadum QL-PLN-00-007 556 bp View
JQ958287.1 nt Vangueria lasiantha voucher Lemaire... 888 bp Vangueria lasiantha QL-PLN-00-007 556 bp View
JQ958288.1 nt Vangueria macrocalyx voucher Lemair... 1701 bp Vangueria macrocalyx QL-PLN-00-007 556 bp View
JQ958289.1 nt Vangueria infausta voucher Lemaire ... 1698 bp Vangueria infausta QL-PLN-00-007 556 bp View
JQ958292.1 nt Vangueria micropyren voucher Dessei... 1703 bp Vangueria micropyren QL-PLN-00-007 556 bp View
JQ958293.1 nt Vangueria pallidiflora voucher Ntem... 1708 bp Vangueria pallidiflora QL-PLN-00-007 556 bp View
JQ958294.1 nt Vangueria parvifolia voucher Lemair... 1703 bp Vangueria parvifolia QL-PLN-00-007 556 bp View
JQ958295.1 nt Vangueria soutpansbergensis voucher... 897 bp Vangueria soutpansbergensis QL-PLN-00-007 556 bp View
JQ958296.1 nt Vangueria latifolia voucher Lemaire... 1712 bp Vangueria latifolia QL-PLN-00-007 556 bp View
JX047764.1 nt Brachysola coerulea voucher Streibe... 1534 bp Brachysola coerulea QL-PLN-00-007 568 bp View
JX047765.1 nt Brachysola halganiacea voucher Anon... 1534 bp Brachysola halganiacea QL-PLN-00-007 569 bp View
JX047766.1 nt Cyanostegia corifolia voucher Strei... 1529 bp Cyanostegia corifolia QL-PLN-00-007 571 bp View
JX047767.1 nt Cyanostegia lanceolata voucher Stre... 1518 bp Cyanostegia lanceolata QL-PLN-00-007 571 bp View
JX047768.1 nt Dicrastylis exsuccosa voucher Anon.... 1541 bp Dicrastylis exsuccosa QL-PLN-00-007 560 bp View
JX047769.1 nt Dicrastylis lewellinii voucher John... 1519 bp Dicrastylis lewellinii QL-PLN-00-007 561 bp View
JX047770.1 nt Hemiandra coccinea voucher Anon. s.... 1499 bp Hemiandra coccinea QL-PLN-00-007 557 bp View
JX047771.1 nt Hemigenia purpurea voucher Wilson 1... 1502 bp Hemigenia purpurea QL-PLN-00-007 551 bp View
JX047772.1 nt Microcorys tenuifolia voucher Anon.... 1493 bp Microcorys tenuifolia QL-PLN-00-007 549 bp View
JX047773.1 nt Prostanthera althoferi voucher Law ... 1457 bp Prostanthera althoferi QL-PLN-00-007 570 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.