Match details
Record ID: |
JX047764.1 |
Database: |
nt |
Go to original record |
Description: |
Brachysola coerulea voucher Streiber 8 trnT-trnL intergenic spacer, partial sequence; tRNA-Leu (trnL) gene, complete sequence; and trnL-trnF intergenic spacer, partial sequence; chloroplast. |
Taxon: |
Brachysola coerulea |
Original size: |
1534 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
639 |
1206 |
+ |
568 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctgctaag tgataacttt caaattcaga gaaaccccgg aattaataaa
101 aatgggcaat cctgagccaa atcctgtttt atcaaaactc aaaacaaagg
151 ttcaaagaac gaaaaaaagg ataggtgcag agactcaatg gaagctgttc
201 taacaaatgg agttgactgc gttggtagag gaatctttcc atggaaactt
251 cagaaaggat gaaggataaa cgtatctatt gaatactata tcaaatgatt
301 aatgatggtc cgaatcttta tttgtatttt ttaatacgaa aaatggaaga
351 attggtgtga attgattcca cattgaagaa aaaatcgaat attcattcag
401 caaatgattc actccatagt ccgatagttc ttttaaagaa ctgattaatc
451 ggacgagaat aaagatagag tcccattcta catgtcaata ccggcaacaa
501 tgaaatttat agtaagagga aaatccgtcg actttaaaaa tcgtgagggt
551 tcaagtccct ctatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.56e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
568 |
549 |
2.56e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.