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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AF430726.1 nt Caesalpinia madagascariensis chloro... 1081 bp Denisophytum madagascariense QL-PLN-00-007 604 bp View
AF430727.1 nt Caesalpinia mexicana chloroplast tR... 1057 bp Erythrostemon mexicanus QL-PLN-00-007 600 bp View
AF430728.1 nt Caesalpinia nelsonii chloroplast tR... 1079 bp Erythrostemon nelsonii QL-PLN-00-007 600 bp View
AF430729.1 nt Caesalpinia pannosa chloroplast tRN... 1070 bp Erythrostemon pannosus QL-PLN-00-007 597 bp View
AF430730.1 nt Caesalpinia paraguariensis chloropl... 1063 bp Libidibia paraguariensis QL-PLN-00-007 598 bp View
AF430731.1 nt Caesalpinia pluviosa chloroplast tR... 1060 bp Cenostigma pluviosum QL-PLN-00-007 591 bp View
AF430732.1 nt Caesalpinia pringlei chloroplast tR... 1065 bp Coulteria pringlei QL-PLN-00-007 598 bp View
AF430733.1 nt Caesalpinia pulcherrima chloroplast... 1065 bp Caesalpinia pulcherrima QL-PLN-00-007 599 bp View
AF430734.1 nt Caesalpinia pumilio chloroplast tRN... 1050 bp Hoffmannseggia pumilio QL-PLN-00-007 592 bp View
AF430735.1 nt Caesalpinia rosei chloroplast tRNA-... 1055 bp Denisophytum rosei QL-PLN-00-007 598 bp View
AF430736.1 nt Caesalpinia sclerocarpa chloroplast... 1058 bp Libidibia sclerocarpa QL-PLN-00-007 597 bp View
AF430737.1 nt Caesalpinia sessilifolia chloroplas... 1075 bp Denisophytum sessilifolium QL-PLN-00-007 598 bp View
AF430738.1 nt Caesalpinia spinosa chloroplast tRN... 1064 bp Tara spinosa QL-PLN-00-007 598 bp View
AF430740.1 nt Caesalpinia trichocarpa chloroplast... 1081 bp Arquita trichocarpa QL-PLN-00-007 580 bp View
AF430741.1 nt Caesalpinia velutina chloroplast tR... 1059 bp Coulteria velutina QL-PLN-00-007 592 bp View
AF430742.1 nt Caesalpinia vesicaria chloroplast t... 1093 bp Caesalpinia vesicaria QL-PLN-00-007 598 bp View
AF430743.1 nt Caesalpinia yucatanensis chloroplas... 1077 bp Erythrostemon yucatanensis QL-PLN-00-007 600 bp View
AF430744.1 nt Hoffmannseggia burchellii chloropla... 1093 bp Pomaria burchellii QL-PLN-00-007 596 bp View
AF430745.1 nt Hoffmannseggia drepanocarpa chlorop... 939 bp Hoffmannseggia drepanocarpa QL-PLN-00-007 590 bp View
AF430746.1 nt Hoffmannseggia drummondii chloropla... 1055 bp Hoffmannseggia drummondii QL-PLN-00-007 592 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.