Match details
Record ID: |
AF430729.1 |
Database: |
nt |
Go to original record |
Description: |
Caesalpinia pannosa chloroplast tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer region, complete sequence; and tRNA-Phe (trnF) gene, partial sequence. |
Taxon: |
Erythrostemon pannosus |
Original size: |
1070 bp |
View other 20492 matches for this method
Predicted amplification details: |
Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
0 |
0 |
1 |
597 |
+ |
597 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgagaacttt caaattcaga gaaaccctgg aattaacaat
101 gggcaatcct gagccaaatc ctgttttccg aaaaccaata agagttcaga
151 aagggagaat aaaaaaagga taggtgcaga gactcaacgg aagctgttct
201 aacaaatgga gttgacgaca tttcttttcg ttagtaaagg aatccttcca
251 tcgaaactcc agaaaagaaa ggataaagga tgaaggatga acatatatat
301 atgtatactg aaatattatt tcaattgatt agaccagaca gaccccaaat
351 ccctattttt ttttaatatt tatatgacaa atgaaagatg tgaatagatt
401 ccaagttgaa gaaagaatca aatgatcaaa tcattcattc catgatagtc
451 tgataaatct tttgaagaac tgattaatcg gacgagaata aagatagagt
501 cccattctac atgtcaatac cgacaacaat gaaatttata gtaagaggaa
551 aatccgtcga ctttagaaat cgtgagggtt caagtccctc tatcccc
Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.69e-08 |
primerB |
100.0 |
20 bp |
0 |
0 |
597 |
578 |
2.69e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.