Match details
| Record ID: |
AF430727.1 |
| Database: |
nt |
Go to original record |
| Description: |
Caesalpinia mexicana chloroplast tRNA-Leu (trnL) gene, partial sequence; trnL-trnF intergenic spacer region, complete sequence; and tRNA-Phe (trnF) gene, partial sequence. |
| Taxon: |
Erythrostemon mexicanus |
| Original size: |
1057 bp |
View other 20492 matches for this method
| Predicted amplification details: |
| Mismatches |
Gaps |
From |
To |
Strand |
Amplicon size |
| 0 |
0 |
1 |
600 |
+ |
600 bp |
|
1 cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51 acctactaag tgagaacttt caaattcaga gaaaccctgg aattaacaat
101 gggcaatcct gagccaaatc ctgttttccg aaaaccaata agagttcaga
151 aagggagaat aaaaaaagga taggtgcaga gactcaacgg aagctgttct
201 aacaaatgga gttgacgaca tttcctttcg ttagtaaagg aatccttcca
251 tcgaaactcc agaaaagaaa ggatcaagga tgaacatata tatatgtata
301 ctgaaatatt atttcaattg attagaccag acagaccccc aatccctatt
351 ttttaatatt tatatgacaa atgaaagatg tgaatagatt ccaagttgaa
401 gaaagaatcg aatatttatt gatcaaatca ttcattccat gataatgata
451 gtctgataaa tcttttgaag aactgattaa tcggacgaga ataaagatag
501 agtcccattc tacatgtcaa taccgacaac aatgaaattt atagtaagag
551 gaaaatccgt cgactttaga aatcgtgagg gttcaagtcc ctctatcccc
| Primer/Probe |
% Identity |
Length |
Mismatches |
Gaps |
From |
To |
Score |
| primerA |
100.0 |
20 bp |
0 |
0 |
1 |
20 |
2.70e-08 |
| primerB |
100.0 |
20 bp |
0 |
0 |
600 |
581 |
2.70e-08 |
|
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.
